Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX337509: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-162784' containing sample 'Clostridium orbiscindens 2_1_42A'
1 ILLUMINA (Illumina HiSeq 2000) run: 3.5M spots, 704.6M bases, 438.5Mb downloads

UUID: 28cda9bf-57fa-4c76-9c8d-f01607194a59

Design: Illumina sequencing of Ruminococcaceae bacterium 2_1_42A via random selection

Submitted by: Broad Institute (BI)

Study: Reference genome for the Human Microbiome Project

PRJNA46371 • SRP028954 • All experiments • All runs

show Abstracthide Abstract

<b><i>Ruminococcaceae bacterium</i> 2_1_42A</b>. Reference genome for the Human Microbiome Project.

Sample: Generic sample from Ruminococcaceae bacterium 2_1_42A

SAMN00998673 • SRS335396 • All experiments • All runs

Organism: Ruminococcaceae bacterium 2_1_42A

Library:

Name: Solexa-162784

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

gssr_id: 333845.0

library_type: IlluminaStufferlessJump

lsid: broadinstitute.org:bsp.prod.sample:4EQMC

material_type: DNA:DNA Somatic

product_order: PDO-1171

product_part_number: P-MCV-0001

project: G37055

research_project: RP-208

root_sample_id: SM-27L6O

sample_id: SM-4EQMC

work_request: 36473

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-07-15 19:43:34.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 1 run, 3.5M spots, 704.6M bases, 438.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR954933	3,488,349	704.6M	438.5Mb	2013-08-21

ID:: 474972

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